Cryo-EM reveals variation in structural motifs within animal SARS-related coronavirus spike proteins
Bostina, M., Hills, F.R., Eruera, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Spike glycoprotein | 1,106 | Civet SARS CoV SZ3/2003 | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D, E, F, I [auth 5], IA [auth f], D, E, F, I [auth 5], IA [auth f], L [auth I], W [auth T] | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | BA [auth Y], EA [auth b], FA [auth c], G [auth p], H [auth 2], BA [auth Y], EA [auth b], FA [auth c], G [auth p], H [auth 2], LA [auth i], NA [auth k], P [auth M], S [auth P], T [auth Q], Z [auth W] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G21290RB GlyCosmos:  G21290RB GlyGen:  G21290RB |
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | DA [auth a], GA [auth d], J [auth G], JA [auth g], M [auth J], DA [auth a], GA [auth d], J [auth G], JA [auth g], M [auth J], PA [auth m], R [auth O], U [auth R], X [auth U] | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G32152BH GlyCosmos:  G32152BH GlyGen:  G32152BH |
Entity ID: 5 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | AA [auth X], HA [auth e], K [auth H], MA [auth j], O [auth L], AA [auth X], HA [auth e], K [auth H], MA [auth j], O [auth L], V [auth S] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | CA [auth Z], KA [auth h], N [auth K], OA [auth l], Q [auth N], CA [auth Z], KA [auth h], N [auth K], OA [auth l], Q [auth N], Y [auth V] | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G00395TQ GlyCosmos:  G00395TQ GlyGen:  G00395TQ |
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EIC Query on EIC | RA [auth A], VA [auth B], YA [auth B] | LINOLEIC ACID C18 H32 O2 OYHQOLUKZRVURQ-HZJYTTRNSA-N | |||
NAG Query on NAG | AB [auth C] BB [auth C] QA [auth A] SA [auth A] TA [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.21_5207 |
Funding Organization | Location | Grant Number |
---|---|---|
Other private | New Zealand | -- |